Mahmoud Ahmed

Postdoc - Biomedicine

Publications


Download BibTeX


2022


Hierarchical Regulation of Autophagy During Adipocyte Differentiation


Mahmoud Ahmed, Trang Huyen Lai, Trang Minh Pham, Sahib Zada, Omar Elashkar, Jin Seok Hwang, Deok Ryong Kim


PLoS ONE, vol. 17(1), 2022 6, pp. e0250865



2021


LINPS: a database for cancer-cell-specific perturbations of biological networks


Mahmoud Ahmed, Deok Ryong Kim


Database, issue 2021, 2021


target: an R package to predict combined function of transcription factors


Mahmoud Ahmed, Deok Ryong Kim


F1000Research, 2021


A functional network model of the metastasis suppressor RKIP and its regulators in breast cancer cells


Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim


Cancers, vol. 13(23), 2021


A Small Fraction of Progenitors Differentiate Into Mature Adipocytes by Escaping the Constraints on the Cell Structure.


Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim


Frontiers in Cell and Developmental Biology, 2021 Sep 11


Cross talk between autophagy and oncogenic signaling pathways and implications for cancer therapy.


Sahib Zada, Jin Seok Hwang, Mahmoud Ahmed, Trang Huyen Lai, Trang Minh Pham, Omar Elashkar, Deok Ryong Kim


Biochimica et Biophysica Acta, vol. 1876(1), 2021 Apr 13, pp. 188565-188565


Transcriptional Repression of Raf Kinase Inhibitory Protein Gene by Metadherin during Cancer Progression.


Trang Huyen Lai, Mahmoud Ahmed, Jin Seok Hwang, Sahib Zada, Trang Minh Pham, Omar Elashkar, Deok Ryong Kim


International Journal of Molecular Sciences, vol. 22(6), 2021 Feb 17



2020


Curated gene expression dataset of differentiating 3T3-L1 adipocytes under pharmacological and genetic perturbations


Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim


Adipocyte, vol. 9(1), 2020, pp. 600-608


Integrating binding and expression data to predict transcription factors combined function


Mahmoud Ahmed, Do Sik Min, Deok Ryong Kim


BMC Bioinformatics, vol. 21(1), 2020, p. 610



2019


Modelling the gene expression and the DNA-binding in the 3T3-L1 differentiating adipocytes.


Mahmoud Ahmed, Deok Ryong Kim


Adipocyte, vol. 8(1), 2019, pp. 401-411


colocr: an R package for conducting co-localization analysis on fluorescence microscopy images.


Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim


PeerJ, 2019 Jun 4



2018


Functional Linkage of RKIP to the Epithelial to Mesenchymal Transition and Autophagy during the Development of Prostate Cancer.


Mahmoud Ahmed, Trang Huyen Lai, Sahib Zada, Jin Seok Hwang, Trang Minh Pham, Miyong Yun, Deok Ryong Kim


Cancers, vol. 10(8), 2018 Jul 16


Co-Expression Network Analysis of AMPK and Autophagy Gene Products during Adipocyte Differentiation


Mahmoud Ahmed, Jin Seok Hwang, Trang Huyen Lai, Sahib Zada, Huynh Quoc Nguyen, Trang Min Pham, Miyong Yun, Deok Ryong Kim


International Journal of Molecular Sciences, vol. 19(6), 2018 May 19


pcr: an R package for quality assessment, analysis and testing of qPCR data


Mahmoud Ahmed, Deok Ryong Kim


PeerJ, 2018 Feb 16


Systematic characterization of autophagy-related genes during the adipocyte differentiation using public-access data.


Mahmoud Ahmed, Huynh Quoc Nguyen, Jin Seok Hwang, Sahib Zada, Trang Huyen Lai, Sang Soo Kang, Deok Ryong Kim


Oncotarget, vol. 9(21), 2018 Jan 15, pp. 15526-15541


miRCancerdb: a database for correlation analysis between microRNA and gene expression in cancer.


Mahmoud Ahmed, Huynh Nguyen, Trang Lai, Deok Ryong Kim


BMC Research Notes, vol. 11(1), 2018 Jan 7, pp. 103-103



Book Chapters


Anti-cancer effect of RKIP via modulating autophagy during metastasis


Mahmoud Ahmed, Deok Ryong KIm


Prognostic and Therapeutic Applications of RKIP in Cancer, Benjamin Bonavida, Stavroula Baritaki, chapter 15, 1st ed., Academic Press, 2020, pp. 277-293